Please post your code in code tags.
Your problem statement and description of the problem are not helpful. Here's my sample run:
Please enter the number of which you want to squareroot:
51
Please enter youre first estimate:
7
Please input a higher value: 8
Please input a higher value: 8
Please input a higher value: 8
Please input a higher value: 8
Please input a higher value:
Seems to be running, even outputting, though it's annoying and I have no idea what it's trying to do. Why don't you post a sample run and describe what it should be doing.
Oh, and there's no "skips over method" that I can see.