Thread: Scanner reading from console via System.in causing NoSuchElementException?

I made the program and it ran fine i then added a new method and that method somehow is causing errors in a different method and im unsure what is happening other than it appears to be to do with Scanner and System.in

 public class Garden {
    public static final Garden GARDEN = new Garden();
    //variable declartaions removed
    public static void main(String[] args) {
        if (null != args && 0 < args.length) {
            GARDEN.fileName = args[0].trim();
        }
        if (GARDEN.fileName != null) {
            GARDEN.fileReader(GARDEN.fileName);
        } else {
            GARDEN.fileReader();
        }
 
        int mainI = 0;
        while (mainI != 1000000) {
            try {
                Thread.sleep(0);
            } catch (InterruptedException e) {
            }
            GARDEN.daysWeather();
            GARDEN.anotherDay();
            mainI++;
        }
    }
	private Garden() {
		System.out.println("_______________________________________");
		startMenu();
	}
 
    protected void fileReader() { // asks for file name for config file
        System.out.println("Enter File Name Please");
        Scanner cmdReader = null;
        String cmdInput = null;
        try {
            cmdReader = new Scanner(System.in);
            cmdInput = cmdReader.nextLine();
        } catch (NoSuchElementException noSuchElement) {
            noSuchElement.printStackTrace();
            fileReader();  //throwing error here
        }
 
        //code removed
    }
 
 
 
    protected void startMenu() {// modified code from ATM lab (week2)
    int selected = 0;
        //code removed 
        Scanner climateScanner = new Scanner(System.in);
        System.out.println("Select a number 1-4");
        selected = climateScanner.nextInt();
        switch (selected) {
        case 1: // semiarid
            weatherType = 10; //10% chance to rain
            climateScanner.close();
            break;
        case 2: // arid
            weatherType = 20; //5% chance to rain
            climateScanner.close();
            break;
        case 3:
            weatherType = 50; //2% chance to rain
            tropicalWeather = true;
            climateScanner.close(); 
            break;
        case 4:
            weatherType = 20;//5% chance to rain 
            storming = true;
            climateScanner.close();
            break;
        default:
            System.out.println("Invalid Input try again");
            startMenu(); //using Recursion to ask for input again
            break;
        }
        //code removed
    }
}

The program still runs fine when I take out the startMenu(); Ive been trying to work this out for 2 hours so any help would be grealy appreciated.
http://pastebin.com/2YRCk73E code for the entire program is there though theres a lot and i don't think it will all help in finding the issue (i copied the Garden 2x by accident)

Thanks ive been trying to fix this for ages