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I don't understand the problem. Show a sample run (copy it from the console and paste into a post) that has the undesired blank line.
Ooops. I see that now in Post #1. Let me play with it.
I think it's being caused by this line:
category[itemCount] = categoryTypes[input.nextInt()-1];
Why are you getting more input? Did you mean instead:
category[itemCount] = categoryTypes[option-1];