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Thread: please help with out of bounds exception

  1. #1
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    Default please help with out of bounds exception

    so I have a task for an online course (in which the forums are no longer active) where i have to find the ratio of letters (C and G) in a string.
    I've marked where i'm getting an out of bounds error -1 with ***
    although i'm stuck as to why

    pls help

    p.s. the error is all i need help with at the moment, I would prefer to figure the rest out on my own :)

    public String cgRatio (String dna){
    int currIndex = 0;
    float cCount = 0;
    float gCount = 0;
    int startIndex = 0;
    while (true){
    currIndex = dna.indexOf(startIndex);
    if ( dna.substring(currIndex, currIndex +1) == "C"){ ***
    cCount ++;
    }
    if (dna.substring(currIndex, currIndex +1) == "G"){
    gCount ++;
    }
    if (currIndex >= dna.length()){
    break;
    }
    startIndex = currIndex +1;
    }
    return "c to g ratio is " + (cCount/gCount);
    }


    //being called to:
    public void test(){
    cgRatio ("CCATGCCCCTATAGTAGATGTTAAAAGAAATATGAACTTAGATTAAGA AACCCC"); ***
    cgRatio ("");
    cgRatio ("ATGTATAGATATAAATATAGAGSsaegTGATAGoiajhegoijaTGA" );
    }

  2. #2
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    Default Re: please help with out of bounds exception

    The exception you are getting is a StringIndexOutOfBoundsException which can occur when no such character is in bounds of a string. The problem you had is that with dna.indexOf(startIndex), you are looking for a character that has a value of 0, not updating the current index.

  3. #3
    Super Moderator Norm's Avatar
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    Default Re: please help with out of bounds exception

    Another problem is using == to compare String objects. You need to use the equals method to compare object contents.
    If you don't understand my answer, don't ignore it, ask a question.

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